Open Anupmas opened 7 years ago
Hi @Anupmas, thanks for the feedback. Just to fully understand what you would like to do: Do you want an easier method to add annotations to a visualization via the perl script? Or do you want to upload the gff files to the final visualization directly (in the web browser)? In principal multiple tracks are already supported although overlapping tracks are not handled perfectly.
Hi @iimog, Thank you so much for your attention. ATV is really great, interactive, beautiful, and easy to use. I loved it. Currently I am comparing some BACs against the sorghum genome. Below I have provided more detail of what I am doing and why some additional features would help me.
Please let me know if I was not clear.
Cool, I'm happy that you like AliTV. Regarding your feature requests: they all sound like good and reasonable extensions to AliTVs capabilities.
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modifier is added to the input file name. @greatfireball do we add this modifier by default or do we transform to uppercase ourselves? I agree that this should be configurable.Thank you @iimog,
AliTV has Excellent interactive visualization capabilities. However, I am not sure how to generate the .yml file. It would be great if I could just upload my gff files to show the annotations. For later it would be great if there were multiple tracks within the chromsome so that overlapping data could be visualized. For example intron-exon strcture of gene, or conserved domains in a gene.