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AliTVTeam / AliTV

Visualize whole genome alignments as linear maps
https://alitvteam.github.io/AliTV/d3/AliTV.html
MIT License
69 stars 11 forks source link

Question about cores usage #159

Closed Tdanis closed 4 years ago

Tdanis commented 4 years ago

Hello again, can we specify the number of cores for last, because my genomes are huge and as I saw the default usage is 2 cores.

iimog commented 4 years ago

Hi, it is possible to provide parameters to the alignment program like this: https://github.com/AliTVTeam/AliTV-perl-interface/blob/master/doc/alitv.md#section-alignment However, lastz seems not to have a parameter that enables multi-core support. You could have a look here: https://github.com/jnarayan81/parallelLastz but I have not tested that.

Tdanis commented 4 years ago

Thank you very much for your help