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AliTVTeam / AliTV

Visualize whole genome alignments as linear maps
https://alitvteam.github.io/AliTV/d3/AliTV.html
MIT License
69 stars 11 forks source link

show the name of each sequences #173

Closed MiaoGuo95 closed 3 years ago

MiaoGuo95 commented 3 years ago

Hello,

My queries and references are multiple sequences. Is there any way to show the name of each fragment sequences after loading JSON file?

Best, Guo

iimog commented 3 years ago

Hi Guo, indeed this feature is lacking and has previously been raised in #148 Apparently, I started implementing this feature but never finished. Can you confirm, that going to https://alitvteam.github.io/AliTV/beta/AliTV.html and enabling sequence labels through Layout Settings > Lable Chromosomes gives some labels but not the ones you are looking for? I'm happy to put some effort in to make this feature work.

In the meantime, if you are just looking to find out the name of some (few) sequences you can right click on them. The context menu that pops up shows the name.

iimog commented 3 years ago

Okay, it is still not pretty but at least the sequence name should be fixed in the beta (no longer the internal id)

iimog commented 3 years ago

In order to avoid repeating myself, I'll close this issue. Discussion continues in #148.