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AllenCell / benchmarking_representations

Benchmarking different methods for extracting unsupervised representations from images
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File path error for pcna notebook #38

Open fatwir opened 6 days ago

fatwir commented 6 days ago

For this notebook (https://github.com/AllenCell/benchmarking_representations/blob/main/src/br/notebooks/fig3_pcna.ipynb) to run, the references to the data in the pcna pointcloud folder does not include the new pcna_updated_sampling_morepoints subfolder in it (eg: a path such as ./morphology_appropriate_representation_learning/preprocessed_data/pcna/pointcloud/0015336b-e361-4ee7-bb73-e599be383d1e.ply will have to be renamed as ./morphology_appropriate_representation_learning/preprocessed_data/pcna/pointcloud/pcna_updated_sampling_morepoints/0015336b-e361-4ee7-bb73-e599be383d1e.ply) in the pcna manifest csv file!

fatwir commented 6 days ago

Either that or we could just move the contents from the pcna_updated_sampling_morepoints subfolder to the pointcloud folder!