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AllenCell / cvapipe

Cell Variance Analysis Pipeline
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Address ColonyPosition column after backfill complete #6

Closed evamaxfield closed 4 years ago

evamaxfield commented 4 years ago

Description

A clear description of the bug

@vianamp needs the ColonyPosition (or better, FOVPosition) column for some of his downstream analysis however currently the column is only about 40% filled with valid values. @aditnath is apparently working on a backfill.

Expected Result

What did you expect to happen instead?

ColonyPosition (or FOVPosition) is a column in the base dataset is optimal that is fully filled ColonyPosition (or FOVPosition) as a CSV or other external datasource being ingested by the dependent step is the other option while the current ColonyPosition column is dropped from the base dataset.

evamaxfield commented 4 years ago

Ping. @aditnath any update on this?

aditnath commented 4 years ago

@JacksonMaxfield i need to get with Matte and run the backfill! I'll try to get this done latest by early next week

jxchen01 commented 4 years ago

@aditnath how is this going? Will the backfill happen this week?

aditnath commented 4 years ago

@jxchen01 yea, have a fix written and need to test it out tomorrow and then implement the change

aditnath commented 4 years ago

ColonyPosition has been completely updated and added to the dataset!

evamaxfield commented 4 years ago

Resolving this as @jxchen01 @toloudis @donovanr @ritvikvasan upgrade lkaccess to 1.4.19.

pip install --upgrade lkaccess