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AllenCell / napari-allencell-segmenter

A plugin that enables image segmentation provided by Allen Institute for Cell Science
BSD 3-Clause "New" or "Revised" License
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Batch processing - Include workflow file in log file #100

Open schoinh opened 3 years ago

schoinh commented 3 years ago

Use Case

I think it would be useful for the plugin user to have a record of which workflow was used to generate the files in the output directory.

Solution

Include the name (and path?) of the workflow json file used for the batch processing at the top of the log file. For example:

Batch processing run with workflow /Users/nahyung.choi/Documents/Test Files/sec61b_workflow.json

SUCCESS: /Users/nahyung.choi/Documents/Test Files/batch_input/test_sample_single.tiff. Output saved at /Users/nahyung.choi/Documents/Test Files/batch_output/test_sample_single.segmentation.tiff
SUCCESS: /Users/nahyung.choi/Documents/Test Files/batch_input/tutorial-mitochondria_1.ome.tif. Output saved at /Users/nahyung.choi/Documents/Test Files/batch_output/tutorial-mitochondria_1.ome.segmentation.tiff
2/2 files were successfully processed.