search

AllenCell / napari-allencell-segmenter

A plugin that enables image segmentation provided by Allen Institute for Cell Science
BSD 3-Clause "New" or "Revised" License
16 stars 6 forks source link

Custom workflows #127

Open schoinh opened 3 years ago

schoinh commented 3 years ago

Requested by @derekthirstrup at meeting on 10/20/2021: https://docs.google.com/document/d/1U2GfnwmVh2ulN6Or4RgTdP83KgrEKKcLSWBozGuTRrA/edit

Requested feature

Custom workflows (in addition to pre-built workflows)

Use case

As a user, I would like to configure and run my own custom workflows that differ from any of the pre-built workflows.

If this change is NOT made...

Check all that apply, by entering an x inside the brackets:

Alternatives

Are there any other plugins or software that you would use in place of this feature? [your answer here]

yrkim98 commented 3 years ago

We already have the ability to save custom workflows. Im guessing this is for loading custom workflows to tweak params?

schoinh commented 3 years ago

@derekthirstrup Please correct me if I'm wrong, but this is for workflows that have a completely different configuration than the ones we provide, not just custom param values. I don't think we have that ability yet.

derekthirstrup commented 3 years ago

Yes it is a custom workflow with changes to a bunch of steps. I also included a hot pixel removal step at the end which is not part of any napari segmenter plugin workflows.

Derek

From: Na Hyung Choi @.***> Sent: Friday, October 22, 2021, 1:46 PM To: AllenCell/napari-allencell-segmenter Cc: Derek Thirstrup; Mention Subject: Re: [AllenCell/napari-allencell-segmenter] Custom workflows (Issue #127)

@derekthirstruphttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fderekthirstrup&data=04%7C01%7C%7C23fdf68ca8e146bd792f08d9959d008f%7C32669cd6737f4b398bddd6951120d3fc%7C0%7C0%7C637705323815761746%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=xIio3mjfgk5eRARtDhlZA4%2BxZWwrgOVp9B4ByrD9Ogs%3D&reserved=0 Please correct me if I'm wrong, but this is for workflows that have a completely different configuration than the ones we provide, not just custom param values. I don't think we have that ability yet.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FAllenCell%2Fnapari-allencell-segmenter%2Fissues%2F127%23issuecomment-949949394&data=04%7C01%7C%7C23fdf68ca8e146bd792f08d9959d008f%7C32669cd6737f4b398bddd6951120d3fc%7C0%7C0%7C637705323815761746%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=N5BWz0PJZ%2FyU%2F1E8OOV1m2VqZjbesBxTYHtGgyEw%2Bkg%3D&reserved=0, or unsubscribehttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAEZFWYKAD3S4GBQTTYKKF23UIHERVANCNFSM5GM2L4PQ&data=04%7C01%7C%7C23fdf68ca8e146bd792f08d9959d008f%7C32669cd6737f4b398bddd6951120d3fc%7C0%7C0%7C637705323815771750%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=k4SE%2Fu7ns9rr2ZjVKT2aSIUkgN45sS9M7ddeUKQr6bs%3D&reserved=0. Triage notifications on the go with GitHub Mobile for iOShttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapps.apple.com%2Fapp%2Fapple-store%2Fid1477376905%3Fct%3Dnotification-email%26mt%3D8%26pt%3D524675&data=04%7C01%7C%7C23fdf68ca8e146bd792f08d9959d008f%7C32669cd6737f4b398bddd6951120d3fc%7C0%7C0%7C637705323815781745%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=AM%2B%2Fq4ya5xjhwzKOOsgGphcD4A4mUhrPwknFhh64cB0%3D&reserved=0 or Androidhttps://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fplay.google.com%2Fstore%2Fapps%2Fdetails%3Fid%3Dcom.github.android%26referrer%3Dutm_campaign%253Dnotification-email%2526utm_medium%253Demail%2526utm_source%253Dgithub&data=04%7C01%7C%7C23fdf68ca8e146bd792f08d9959d008f%7C32669cd6737f4b398bddd6951120d3fc%7C0%7C0%7C637705323815781745%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=6fLbHX%2BQWdVhAeEyzsx5zRqIsDdzVwlqpEzoLz7A05o%3D&reserved=0.