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AllenCell / napari-allencell-segmenter

A plugin that enables image segmentation provided by Allen Institute for Cell Science
BSD 3-Clause "New" or "Revised" License
16 stars 6 forks source link

Feature/sweep #134

Closed yrkim98 closed 2 years ago

yrkim98 commented 2 years ago

This is a huge PR- sorry in advance.

This is one big pr which includes step by step functionality, parameter sweeping, ability to select input images for workflow steps, and some UI changes for our 2.0 release.

codecov[bot] commented 2 years ago

Codecov Report

Merging #134 (bae5ac4) into main (9680732) will decrease coverage by 9.19%. The diff coverage is 49.62%.

@@            Coverage Diff             @@
##             main     #134      +/-   ##
==========================================
- Coverage   84.70%   75.50%   -9.20%     
==========================================
  Files          34       35       +1     
  Lines        1432     1915     +483     
==========================================
+ Hits         1213     1446     +233     
- Misses        219      469     +250
Impacted Files Coverage Δ
..._allencell_segmenter/widgets/param_sweep_widget.py 13.18% <13.18%> (ø)
...ri_allencell_segmenter/view/workflow_steps_view.py 87.42% <64.00%> (-4.19%) :arrow_down:
...ari_allencell_segmenter/core/viewer_abstraction.py 79.16% <66.66%> (-9.07%) :arrow_down:
..._segmenter/controller/workflow_steps_controller.py 71.47% <70.83%> (+13.58%) :arrow_up:
...llencell_segmenter/widgets/workflow_step_widget.py 94.01% <92.68%> (+1.15%) :arrow_up:
...segmenter/controller/workflow_select_controller.py 95.71% <100.00%> (ø)
napari_allencell_segmenter/core/layer_reader.py 87.69% <100.00%> (ø)
napari_allencell_segmenter/util/ui_utils.py 100.00% <100.00%> (ø)
...ari_allencell_segmenter/widgets/collapsible_box.py 100.00% <100.00%> (+3.27%) :arrow_up:
...allencell_segmenter/widgets/workflow_thumbnails.py 83.69% <100.00%> (+0.17%) :arrow_up:
... and 1 more

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