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AllenCell / napari-allencell-segmenter

A plugin that enables image segmentation provided by Allen Institute for Cell Science
BSD 3-Clause "New" or "Revised" License
16 stars 6 forks source link

Installation Fails on Apple M1 machine #147

Closed dgmccart closed 1 year ago

dgmccart commented 1 year ago

Description

Installing the plugin with pip fails on my Apple M1 machine

Error message

 ERROR: Failed building wheel for numpy
      Failed to build numpy
      ERROR: Could not build wheels for numpy, which is required to install pyproject.toml-based projects

The full error can be read here.

Expected Behavior

The plugin to install.

Reproduction

Please list the exact steps we can take to reproduce this bug.

  1. Create a clean conda virtual environment
  2. Install napari version 0.4.16 with conda-forge
  3. Attempt to pip install the plugin

Environment

yrkim98 commented 1 year ago

This is quite odd- but I will investigate further. I am on a m1 macbook as well and creating a fresh environment running python 3.9, followed by a conda-forge installation of napari and a pip installation of napari-allencell-segmenter does not generate any bugs for me.

dgmccart commented 1 year ago

What version of napari installed? I installed 0.4.16 in another fresh environment and encountered the same error. Here are all the commands I ran:

conda create -y -n napari-env -c conda-forge python=3.9
conda activate napari-env
conda install -c conda-forge napari=0.4.16
pip install napari-allencell-segmenter
yrkim98 commented 1 year ago

Could you try installing napari-allencell-segmenter after installing numpy like this? This should install numpy without any errors for a M1 macbook.

conda update napari
pip3 install Cython
pip3 install --no-binary :all: --no-use-pep517 numpy
pip3 install pandas
pip3 install ib_insync

Let me know if that works.

yrkim98 commented 1 year ago

@dgmccart this is now resolved