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AllenCellModeling
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aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
https://allencellmodeling.github.io/aicsimageio
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Disable "test-upstreams" action except in workflow dispatch case
#569
evamaxfield
closed
1 month ago
0
Turn off "Test Upstreams" Action
#568
evamaxfield
closed
1 month ago
1
update README to point to bioio
#567
toloudis
opened
3 months ago
0
Add warning about deprecation
#566
SeanLeRoy
closed
2 months ago
0
Data vs. Dims Dimensions Mismatch
#565
tejasthy
closed
3 months ago
0
test fixes
#564
joshua-gould
opened
3 months ago
3
removed tiffile max version
#563
joshua-gould
opened
3 months ago
0
removed py38 as it is not supported
#562
joshua-gould
opened
3 months ago
2
unpin fsspec max version
#561
joshua-gould
opened
3 months ago
1
unpin zarr max version
#560
joshua-gould
opened
3 months ago
1
Readme link to writer docs 404s from inside github
#559
JulianoGianlupi
opened
3 months ago
0
Extract Physical Pixel Size from SEM TIFF metadata.
#558
gyger
opened
4 months ago
1
Documentation/typo in dim_order documentation
#556
alanocallaghan
opened
7 months ago
0
tifffile dependency: version pin outdated?
#555
m-albert
closed
7 months ago
4
Importing fails
#554
onurserce
closed
7 months ago
2
Questions regarding compression method choice with OmeTiffWriter.save()
#553
AlanWu886
opened
7 months ago
2
Remove ceiling on dependencies
#552
joshua-gould
opened
7 months ago
0
add doc for ome zarr writer
#551
jackyko1991
opened
8 months ago
0
Large timing overhead on TiffReader
#550
Armavica
opened
9 months ago
6
TimeStamps
#549
ant-trullo
opened
9 months ago
0
Move test resources to new bucket
#548
SeanLeRoy
closed
10 months ago
0
Bugfix/Bfio unpin tifffile
#547
jplumail
closed
7 months ago
1
Allow more channels in metadata than in data
#546
SeanLeRoy
closed
10 months ago
1
support cache file system
#545
joshua-gould
closed
3 months ago
1
Remove ceiling on Pillow; adjust default reader expectations
#543
SeanLeRoy
closed
10 months ago
2
Try newest imageio
#542
SeanLeRoy
closed
11 months ago
1
main[base-imageio] failing due to Pillow
#541
SeanLeRoy
closed
10 months ago
0
Move test files out of old modeling AWS account
#540
SeanLeRoy
opened
11 months ago
0
Specify resolution level for reading OME-Zarr
#539
tischi
closed
10 months ago
6
Move off Node12
#538
SeanLeRoy
closed
11 months ago
1
Adjust bfio & fsspec versions to avoid bugs
#537
SeanLeRoy
closed
11 months ago
1
Limit fsspec version for now due to glob bug
#536
SeanLeRoy
closed
11 months ago
1
Adjust pydantic import
#535
SeanLeRoy
closed
11 months ago
1
pydantic user warning on import
#534
winnubstj
closed
11 months ago
0
Feature/nd2reader-xarray-ome-metadata
#533
yichechang
closed
11 months ago
18
czi number of channels can be out of sync and is reported as error
#532
toloudis
closed
10 months ago
2
test - ignore this
#531
SeanLeRoy
closed
11 months ago
0
Drop py3.8 support; upgrade dependencies to support new min py
#530
SeanLeRoy
closed
11 months ago
1
Revert to pre-2023.3.15 tifffile to avoid mm_stack issue
#529
SeanLeRoy
closed
1 year ago
1
Fix publish task according to pypi rec for 2fa accounts
#528
SeanLeRoy
closed
1 year ago
2
Limit numpy and dask
#527
SeanLeRoy
closed
1 year ago
1
current dask no longer supports Python 3.8
#526
toloudis
closed
11 months ago
0
update gh-actions to fix warnings about deprecated node12 actions
#525
toloudis
closed
11 months ago
0
ome_metadata fro czi file
#524
TomPJWyatt
closed
11 months ago
10
tifffile min version incorrect, and now incompatible with bfio extra
#523
tlambert03
closed
1 year ago
6
DependencyFix/Upgrade ome-types to 0.3.4
#522
Armavica
closed
1 year ago
14
Feature/ome_metadata-for-nd2
#521
tlambert03
closed
1 year ago
3
`Dimensions` typing
#520
multimeric
closed
1 year ago
2
Feature/OmeZarr Chunk Dims
#519
BrianWhitneyAI
closed
1 year ago
2
Latest version of aicsimageio cannot read some czi images
#518
christinab12
closed
1 year ago
5
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