Feature/hiera - Githubissues

AllenCellModeling / cyto-dl

https://allencellmodeling.github.io/cyto-dl/

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Feature/hiera #418

Closed benjijamorris closed 2 months ago

benjijamorris commented 2 months ago

What does this PR do?

add 2d and 3d Hiera Models
refactor mae/hiera to encoder/decoder.py instead of model-specific files
unify patchify code
add tests
updates to JEPA to accommodate refactoring

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[ ] Did you make sure your PR does only one thing, instead of bundling different changes together?
[x] Did you list all the breaking changes introduced by this pull request?
[x] Did you test your PR locally with pytest command?
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ritvikvasan commented 2 months ago

windows tests always seem to be failing. any ideas why?

benjijamorris commented 2 months ago

the windows tests are just way slower for some reason... all the tests pass but I set a 70 minute time out so we don't rack up crazy costs.