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AllenCellModeling / napari-aicsimageio

Multiple file format reading directly into napari using pure Python
GNU General Public License v3.0
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Problem when reading tiff. Issue related with the `aicsimageio[all]` bug #75

Open jplumail opened 1 year ago

jplumail commented 1 year ago

FYI this issue may cause trouble to this package.

Because it uses aicsimageio[all] https://github.com/AllenCellModeling/napari-aicsimageio/blob/main/pyproject.toml#L48

the wrong version of tifffile is installed, leading to bugs.

Description

Reading a Tiff file fails. I had to use the napari-builtins to read it.

Expected Behavior

Open a Tiff.

Reproduction

python -m napari "https://people.math.sc.edu/Burkardt/data/tif/at3_1m4_01.tif"

Environment

I have the latest version of aicsimageio.

psobolewskiPhD commented 1 year ago

Thanks for reporting. I'm not sure how to handle this one. bfio doesn't seem to be overly actively developed—perhaps we just need to drop it for the time being. 🤔