AllenCellModeling / pytorch_fnet

Three dimensional cross-modal image inference
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Running pip install . gives error #186

Open jamila-griffith opened 6 months ago

jamila-griffith commented 6 months ago

I have followed the instructions to install fnet on a linux server using conda in an environment, as described on this page and when I run the pip install ., it gives me error error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully. │ exit code: 1 ╰─> [33 lines of output] Traceback (most recent call last): File "/home/anaconda3/envs/fnet/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in main() File "/home/anaconda3/envs/fnet/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main json_out['return_val'] = hook(**hook_input['kwargs']) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/anaconda3/envs/fnet/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 112, in get_requires_for_build_wheel backend = _build_backend() ^^^^^^^^^^^^^^^^ File "/home/anaconda3/envs/fnet/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 77, in _build_backend obj = import_module(mod_path) ^^^^^^^^^^^^^^^^^^^^^^^ File "/home/anaconda3/envs/fnet/lib/python3.12/importlib/init.py", line 90, in import_module return _bootstrap._gcd_import(name[level:], package, level) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "", line 1387, in _gcd_import File "", line 1360, in _find_and_load File "", line 1310, in _find_and_load_unlocked File "", line 488, in _call_with_frames_removed File "", line 1387, in _gcd_import File "", line 1360, in _find_and_load File "", line 1331, in _find_and_load_unlocked File "", line 935, in _load_unlocked File "", line 995, in exec_module File "", line 488, in _call_with_frames_removed File "/tmp/pip-build-env-vg49h5_7/overlay/lib/python3.12/site-packages/setuptools/init.py", line 16, in import setuptools.version File "/tmp/pip-build-env-vg49h5_7/overlay/lib/python3.12/site-packages/setuptools/version.py", line 1, in import pkg_resources File "/tmp/pip-build-env-vg49h5_7/overlay/lib/python3.12/site-packages/pkg_resources/init.py", line 2172, in register_finder(pkgutil.ImpImporter, find_on_path) ^^^^^^^^^^^^^^^^^^^ AttributeError: module 'pkgutil' has no attribute 'ImpImporter'. Did you mean: 'zipimporter'? [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully. │ exit code: 1 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

I was wondering if someone can suggest a solution.

Thanks

alxndrkalinin commented 3 months ago

Try downgrading Python to 3.11?

jamila-griffith commented 3 months ago

Thanks. I will try that and let you know.