AllenCellModeling / pytorch_integrated_cell

Integrated Cell project implemented in pytorch
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Intro: Finesse raw vs segmented images #60

Closed donovanr closed 4 years ago

donovanr commented 4 years ago

Issue summary

decide how to handle raw vs seg as interesting or not.

Details

I think the emphasis on raw image vs. segmentation input in the current introduction is a red herring. First, not all feature extraction requires segmentation (e.g. very few of the hundreds of CellProfiler features do). Second, it would be fine (desirable!!!) to use segmented images as input into the autoencoder, so don’t make it sound like segmentations are bad.

TODO

donovanr commented 4 years ago

i think the issue can be clarified as

with those caveats, i think the issue stands as one worth mentioning