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AllenCellModeling / pytorch_integrated_cell

Integrated Cell project implemented in pytorch
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Results: Table 1 #62

Closed donovanr closed 4 years ago

donovanr commented 4 years ago

Issue summary

Largely naming corrections

Details

Table 1: “Golgi” should probably be called “Golgi apparatus”. The gene name for “Plasma membrane” should not be AAVS1. This is the “safe harbor” locus. The fluorescent protein label in that cell line is fused to a membrane-targeting CAAX tag (a site for prenylation). Please ask Ru how this should be abbreviated in the “gene name” column. Also please ask Susanne and Chris whether it would be better to say “nuclear envelope” or “nuclear lamina” (the lamina is, technically, part of the envelope, but people often are thinking of the double membrane when they say “envelope”, and we have a different cell line (nucleoporin Nup153) that has a tag embedded in the nuclear membrane).

TODO

donovanr commented 4 years ago

synced everything to what's on https://www.allencell.org/cell-catalog.html