AllenCellModeling / pytorch_integrated_cell

Integrated Cell project implemented in pytorch
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Results: Content related to Fig. 2 #64

Closed donovanr closed 3 years ago

donovanr commented 4 years ago

Issue summary

better definition of "sampling"

Details

It is not at all clear from the text what is meant by “sampling” (7 instances in part A, 3 instances each in part B). What determines the variation in the “samples”? It is very striking that the independent samples of the nuclear lamin all look just about exactly alike, while the sampled mitochondrial images are quite different (blobbier or fuzzier). I suspect this must reflect the intrinsic underlying variation in the organelle distributions, which vary by organelle type, but this is not explained at all.

TODO