AllenInstitute / AIBSOPT

Optical projection tomography microscope for isotropic whole-brain imaging
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Add pre-processing app #4

Closed jsiegle closed 4 years ago

jsiegle commented 4 years ago

Creates a new app for manually defining a set of affine transforms for the original OPT images (preprocessing_app.py), to align the OPT volume along the standard A/P, D/V, M/L axes prior to registration and annotation.

Removes the manual alignment code from opt_volume_creator.py, and turns this file into an executable script that generates Drishti volumes based on the angles and offsets defined in the preprocessing step.