Create Mask Binarization and Cell Creation Module

[pickles-bread-and-butter]

Overview:

There needs to be a module that takes a Suite2p output stat.npy file and binarizes the masks and writes them into a .json file in LIMS ROI format. There already exist methods for doing the binarization and loading from Suite2p file in Ophys ETL Pipelines.

Tasks:

• [ ] Create new method for transforming masks to LIMS format
• [ ] Wrap functions together to load masks from s2p output file, transform to LIMS format, and write to .json file
• [ ] Write input and output schema to verify correct input data and ROIs have been written to LIMs format

Validation Criteria:

• [ ] A module exists that can run a stat.npy file through and produce binarized ROIs in a output json

[pickles-bread-and-butter]

This should have been in ophys_etl closing and opening in that repo