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AllenInstitute / AllenSDK

code for reading and processing Allen Institute for Brain Science data
https://allensdk.readthedocs.io/en/latest/
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Visual Coding Targeted Experiments #1992

Open wbwakeman opened 3 years ago

wbwakeman commented 3 years ago

Create NWB files and SDK access methods for Visual Coding Targeted Experiments data sets

VisCodingTargetedTFxSF VisCodingTargetedContrast VisCodingTargetedMovies VisCodingTargetedScenes VisCodingTargetedRunningDecoding VisCodingTargetedSignalNoise

LIMS db query to get the data sets

SELECT p.code, sp.name AS specimen, os.id AS os_id, os.name AS os, os.stimulus_name , oe.id AS oe_id, oe.workflow_state AS oe_state
FROM specimens sp JOIN ophys_sessions os ON os.specimen_id=sp.id AND os.workflow_state = 'uploaded' JOIN projects p ON p.id=os.project_id
JOIN ophys_experiments oe ON oe.ophys_session_id=os.id AND oe.workflow_state NOT IN ('failed','processing')
WHERE p.code LIKE 'VisCodingTargeted%'
ORDER BY 1,2,5;
wbwakeman commented 3 years ago

Need to get them to QC these experiments: 794374363 724251668 742809180 743806875 730339800 786495485