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AllenInstitute / AllenSDK

code for reading and processing Allen Institute for Brain Science data
https://allensdk.readthedocs.io/en/latest/
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AWS jupyter notebook #2496

Closed bainro closed 2 years ago

bainro commented 2 years ago

I tried both ways documented here to get the jupyter notebook running: https://github.com/AllenInstitute/AllenSDK/wiki/Use-the-Allen-Brain-Observatory-%E2%80%93-Visual-Coding-on-AWS#jupyter-notebook-launch-instructions

Both times it hangs while starting the notebook: image

I was thinking of trying to run the docker image, is that still maintained?

Are there any other options I should consider? I want to visualize the 2 photon and neuropixel data :)

bainro commented 2 years ago

The log looks like this: image

bainro commented 2 years ago

I was able to use anaconda to install allensdk and play with some of the notebooks. Don't know if I have a limited set of functionality going this route, should report back with an update if I find limitations.