AllenInstitute / AllenSDK

code for reading and processing Allen Institute for Brain Science data
https://allensdk.readthedocs.io/en/latest/
Other
340 stars 150 forks source link

Mouse atlas in surface space #2507

Open Davi1990 opened 2 years ago

Davi1990 commented 2 years ago

Hello all,

I am touching base with you because I am currently working on some mouse data and I would like to visualize my result into a surface. I have downloaded both the brain surface (/wholebrain.x3d) and the atlas (P56_Annotation.nii.gz) from this web site:

https://scalablebrainatlas.incf.org/mouse/ABA_v3

However, I have some difficulties to find correspondence between vertices and brain regions. Specifically in the brain surface file (/wholebrain.x3d) there are 31751 vertices, I was wondering if you have a vector file 1x31751 which specify what vertex belong to a specific parcellation value.

I was thinking if you could please help me with that

Thanks in advance for your help

Best Regards