AllenInstitute / AllenSDK

code for reading and processing Allen Institute for Brain Science data
https://allensdk.readthedocs.io/en/latest/
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Write python module to create input JSON for LFP NWB generation #2554

Closed danielsf closed 1 year ago

danielsf commented 1 year ago

Historically, LFP NWB files were created with a LIMS strategy. We do not want to rely on the ruby code, so we will write a python module to query the LIMS database and generate the input JSONs needed for LFP data generation.

Can live alongside the input_json writer codes for ecephys sessions in here

https://github.com/AllenInstitute/AllenSDK/tree/master/allensdk/brain_observatory/vbn_2022

danielsf commented 1 year ago

Hacky example code for LFP NWB generation can be found in

/allen/aibs/informatics/danielsf/lfp_nwb
aamster commented 1 year ago

Pulling data files to generate LFP data is complete, which was added to the existing input json creator. Still to do: current source density.