Open wbwakeman opened 5 years ago
For Morphology Upright Transform, it is missing a package that is added to the PYTHONPATH by that run_python.sh script
import neuron_morphology.swc as swc
ModuleNotFoundError: No module named 'neuron_morphology'
/shared/bioapps/infoapps/lims2_modules/lib/python/run_python.sh export PYTHONPATH=/shared/bioapps/infoapps/lims2_modules/lib/neuron_morphology:${PYTHONPATH}
breaking: "MORPHOLOGY_UPRIGHT_TRANSFORM_QUEUE" "TISSUECYTE_PROJECTION_THUMBNAIL_QUEUE" "NEURON_GLOBAL_FEATURES_QUEUE" "TISSUECYTE_UNIONIZE_CAV_QUEUE" "TISSUECYTE_UNIONIZE_CLASSIC_QUEUE" "EPHYS_NWB_CONVERTER_QUEUE" "CONNECTIVITY_CORTICAL_PROJECTION_QUEUE"
not breaking: "OPHYS_MOTION_CORRECTION_QUEUE" "ISI_NWB_QUEUE" "NIKON_ND2_DECONVOLUTION_QUEUE" "DEWARPING_QUEUE"
Fixed: "NEUROPIL_CORRECTION_QUEUE" "ANNOTATED_REGION_METRICS_QUEUE"