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AllenInstitute / OpenScopeNWB

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Add STIM templates to ophys files #176

Closed Ahad-Allen closed 6 months ago

Ahad-Allen commented 9 months ago

Currently, the dendrite NWB files are missing their stimulus movies. We need to attach them to each file, which will increase the file size by ~4 gigs.

Ahad-Allen commented 9 months ago

I went through the documentation for pynwb and it looks like we can use an image series to store these movies, very similarly to what we do for the ecephys templates. Will try an example generation today

jeromelecoq commented 8 months ago

Some code is working. Ahad will make a code ocean capsule to append template

Ahad-Allen commented 8 months ago

Repo here: https://codeocean.allenneuraldynamics.org/capsule/0862591/tree

Ahad-Allen commented 8 months ago

sub-621602/sub-621602_ses-1194555869-acq-1194754131_image+ophys.nwb has a denoised file with templates for carter to use :)

Ahad-Allen commented 8 months ago

https://github.com/AllenInstitute/DendriteTemplateCapsue