AllenInstitute / brain_observatory_qc

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Containers not generating for new mice #260

Closed samiamseid closed 7 months ago

samiamseid commented 1 year ago

Describe the bug I added mouse ID 662470 to the OpenscopeDendriteCoupling datacube and it is not generating the expected containers. I've also had other issues trying to get containers to repopulate for some mouse-closing, so i suspect something is amiss with container generation in general.

Expected behavior containers should generate based on datacube entrees

DowntonCrabby commented 1 year ago

@samiamseid @seanmcculloch Is this a mouse-QC issue or a LIMS issue? It seems like this should be high priority as I think it likely blocks important processing and QC steps

samiamseid commented 1 year ago

i believe it is a mouse-qc issue. a couple weeks ago Sean did something that briefly got the containers to regenerate, but they stopped again. example mouse 661749

samiamseid commented 9 months ago

Just wanted to update this with the comment that there are 3 particular mice that dont seem to generate containers. I've tried deleting the cube records from MongoDB and then re-entering the line in the datacube for these mice, but mouse_qc simply does not generate new containers. 661749 647715 644972

These are OpenScopeDendriteCoupling mice that have been stuck in my mouse-closing queue since May because i'm unable to QC the containers in LIMS

matchings commented 9 months ago

@seanmcculloch @samiamseid is this still a problem? i assume it is resolved by now. If so, we should close the ticket

samiamseid commented 9 months ago

I'm still having the issue mentioned in the previous comment, but the original issue has been resolved. I can make a new ticket if preferred?

seanmcculloch commented 7 months ago

I'm not sure why these needed a nudge but containers have been generated. Directly contacting Sam that these mice are ready for closing!