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AllenInstitute
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cell_type_mapper
Repository for storing prototype functionality implementations for the BKP
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Feature Request: report bootstrap probabilities across hierarchy even when flat mapping is used
#27
berl
opened
1 day ago
0
RuntimeError when trying to run online MapMyCells mouse brain taxonomy programmatically
#26
Winterwind
opened
2 weeks ago
0
Map/to/partial/taxonomy/241021
#25
danielsf
closed
2 weeks ago
1
Is this the source codes behind MapMyCells?
#24
beyondpie
closed
1 month ago
3
RuntimeError when creating custom reference
#23
KaczorowskiLab
opened
2 months ago
23
update_uns can now handle nested keys
#22
danielsf
opened
2 months ago
0
Update uns to precomp stats to take a list as parameter
#21
inkarkapen
opened
4 months ago
2
cell_type_mapper.cli.query_markers can't run if precomputed_stats isn't in cached directory
#20
scseeman
closed
4 months ago
1
Chisq/markers/240607
#19
danielsf
closed
5 months ago
0
Frac/value/lookup/240410
#18
danielsf
closed
6 months ago
1
Rc/v1.3.0
#17
danielsf
closed
5 months ago
0
MapMyCells hierachical algorithm. No marker genes listed
#16
JRS92
closed
2 months ago
4
Specific marker genes for classes
#15
mbatiuk
closed
8 months ago
2
Marshmallow Error in cell_type_mapper.cli.from_specified_markers
#14
mtvector
closed
8 months ago
2
Missing runner-up assignments
#13
mdeber
closed
8 months ago
1
MapMyCells app taxonomy files
#12
KatMedMed
closed
3 months ago
7
Marker genes in JSON file - Correlation analysis mode
#11
mitsiaskonstanto
opened
11 months ago
5
Running the 2nd step of the cell type mapping pipeline
#10
mitsiask
opened
11 months ago
8
clean up logs
#9
cacerca
closed
1 year ago
0
h5ad path needs to be a pathlib Path
#8
cacerca
closed
1 year ago
0
Add validation change property to ValidateH5adRunner
#7
cacerca
closed
1 year ago
0
allow output log file to be appended to.
#6
cacerca
closed
1 year ago
0
Add optional validated query file path and log output file path.
#5
cacerca
closed
1 year ago
0
Set start method to spawn for multiprocessing if gpu available
#4
cacerca
closed
1 year ago
0
change in output information
#3
mkunst23
closed
11 months ago
6
Adding GPU support
#2
cacerca
closed
1 year ago
1
Allow function to be called with inputs from Batch run script. Add co…
#1
cacerca
closed
1 year ago
1