AllenInstitute / ecephys_etl_pipelines

Pipelines and modules for processing extracellular electrophysiology data
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Run sessions through pipeline #27

Closed wbwakeman closed 2 years ago

wbwakeman commented 2 years ago

After the monitor delay #20 and running speed #9 issues are merged, then run all Visual Behavior Neuropixels sessions through pipeline starting with VBN_CREATE_STIM_TABLE_QUEUE. Investigate failures. If successfully run through pipeline, then provide output files to Corbett for inspection.

Note that these are likely to fail in the ECEPHYS_WRITE_NWB_QUEUE which is expected (still need to design the module to write NWB files for this project).

ns706 commented 2 years ago

I've run everything through the monitor delay queue (VBN_CREATE_STIM_TABLE_QUEUE) and I have shown the results to Corbett to look at.

ns706 commented 2 years ago

19 jobs have failed in the ECEPHYS_ALIGN_TIMESTAMPS_QUEUE due missing probes.

'Error: No probes with all required data.'

wbwakeman commented 2 years ago

I did some LIMS pipeline tweaks.

wbwakeman commented 2 years ago

Corbett provided an updated "complete" list of VBN experiments. Need to ensure that all of these have run through the pipeline