AllenInstitute / ecephys_etl_pipelines

Pipelines and modules for processing extracellular electrophysiology data
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Update data release tool with new VBN project plugin #31

Closed wbwakeman closed 2 years ago

wbwakeman commented 2 years ago

Update data release tool with new visual behavior Neuropixels project plugin

https://github.com/AllenInstitute/informatics_data_release_tools/blob/main/src/data_release_tools/project_specific_plugins/adding_new_plugins.rst

The input to the data release tool needs to be a project level metadata (*.csv) writer.

One will need to be written for visual behavior neuropixels. This is the one for visual behavior ophys (but double check with Adam Amster):

https://github.com/AllenInstitute/AllenSDK/blob/master/allensdk/brain_observatory/behavior/behavior_project_cache/external/behavior_project_metadata_writer.py

project name: visual-behavior-neuropixels project release date: 2022-04-28

In addition to above, there are some tasks for Wayne:

Tasks

Validation

danielsf commented 2 years ago

Here is a cartoon example of what we need to implement

https://github.com/AllenInstitute/informatics_data_release_tools/blob/danielsf/cartoon/release/src/data_release_tools/project_specific_plugins/cartoon_plugin.py

danielsf commented 2 years ago

Whoever takes on this ticket will probably need to converse with whoever takes on ticket #33, mostly to make sure that the file_id and local_file_path column generated by the metadata writer are what this plugin expects.