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AllenInstitute / ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes
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Executable for median subtraction for MacOS #81

Open jazlynntan opened 1 year ago

jazlynntan commented 1 year ago

Hi, Is there a MacOS version of the compiled executable for the median subtraction module? I found a windows and linux version in the closed issues (#50) but not a MacOS one.

I am using MacOS Ventura on a M2 chip - is the module compatible?

Thank you.

jsiegle commented 1 year ago

Hi there – we're not able to compile this for Mac. Instead, I'd recommend using SpikeInterface, which now incorporates almost all of the functionality of ecephys_spike_sorting, and is being actively maintained. It also includes destriping methods that remove noise more effectively than median subtraction alone. Check out this tutorial for instructions on how to use SpikeInterface with Neuropixels data.