AllenInstitute ecephys_spike_sorting issues

AllenInstitute / ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

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issues

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Fix bug in PC feature channel selection

#42 jsiegle closed 5 years ago
1
Implement silhouette_score as quality metric

#41 jsiegle closed 5 years ago
0
Potential synergy between this repository and SpikeInterface

#40 colehurwitz closed 5 years ago
3
Add visualization functions

#39 jsiegle closed 5 years ago
0
Add spike_templates to load_kilosort_data

#38 jsiegle closed 5 years ago
0
Change the outputs of kilosort_postprocessing to overwrite the originals

#37 jsiegle closed 5 years ago
0
Add drift metrics

#36 jsiegle closed 5 years ago
0
test_waveform_metrics

#35 jiaxx closed 5 years ago
0
batch_processing.py fails to execute any modules

#34 ldclaar closed 5 years ago
2
Command returned non-zero exit status 1

#33 jiaxx closed 5 years ago
6
KeyError: 'mean_waveforms_params'

#32 jiaxx closed 5 years ago
1
26/ks updates

#31 jsiegle closed 5 years ago
0
Update noise template classifier.

#30 jsiegle closed 5 years ago
0
21/mean waveforms

#29 jsiegle closed 5 years ago
0
27/post ks

#28 jsiegle closed 5 years ago
0
Implement module to remove putative double-counted spikes

#27 jsiegle closed 5 years ago
4
Update kilosort_helper to work with the latest version of Kilosort2

#26 jsiegle closed 5 years ago
0
20/new metrics

#25 jsiegle closed 5 years ago
0
expose modules as entrypoints on install, use relative pathing

#24 mochic closed 5 years ago
0
Implement auto-merging

#23 jsiegle closed 5 years ago
0
Improve noise unit classifier

#22 jsiegle closed 5 years ago
0
Improve mean waveform calculation

#21 jsiegle closed 5 years ago
1
Add new metrics

#20 jsiegle closed 5 years ago
0
find_depth needs to be updated for mean waveforms

#19 jsiegle closed 5 years ago
2
15/kilosort params

#18 jsiegle closed 6 years ago
2
pip install fails on Windows

#17 jsiegle opened 6 years ago
1
Create a module for batch processing

#16 jsiegle closed 5 years ago
0
Move Kilosort parameters into input json

#15 jsiegle closed 6 years ago
0
Move unit tests to integration test

#14 jsiegle opened 6 years ago
0
9/create tests

#13 jsiegle closed 6 years ago
1
Generate test report

#12 NileGraddis closed 6 years ago
0
add parameter to correct waveform amplitude in extractWaveform

#11 jiaxx closed 6 years ago
1
waveform variance

#10 NileGraddis closed 5 years ago
3
Set up tests

#9 jsiegle closed 5 years ago
0
Module usage

#8 jsiegle closed 5 years ago
1
Add npx extractor module

#7 jsiegle closed 6 years ago
0
Create module for raw data extraction

#6 jsiegle closed 6 years ago
0
Add extractWaveforms.py

#5 jsiegle closed 6 years ago
0
3/create modules

#4 jsiegle closed 6 years ago
0
Create modules for calculating mean waveforms and quality metrics

#3 jsiegle closed 6 years ago
0
Docs build is broken

#2 NileGraddis opened 6 years ago
4
Initial code migration

#1 NileGraddis closed 6 years ago
0