AllenInstitute ipfx issues

AllenInstitute / ipfx

computes intrinsic cell features from intracellular electrophysiology data

https://ipfx.readthedocs.io/en/latest/

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issues

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[note] [dev] Removal of set_container_sources() method in IPFX 2.0.0

#560 sheriferson opened 8 months ago
0
Python 3.9/3.11 support, dropping Python 3.6 support, and moving to GitHub Actions

#559 sheriferson closed 8 months ago
0
pip install ipfx fails on macOS with M1 arm64 cpu (apple silicon)

#558 cudmore closed 9 months ago
1
can't install ipfx

#557 sayakaminegishi closed 8 months ago
3
fixes error messages in _get_series

#556 MatthewAitken closed 1 year ago
0
Fail using the create_ephys_data_set to open nwb file in the patch-seq ephys dataset.

#555 melancholy12 opened 1 year ago
3
bugfix / pause + burst detection

#554 mzabolocki opened 1 year ago
0
detect pauses update

#553 mzabolocki closed 1 year ago
1
Release 1.0.7

#552 MatthewAitken closed 1 year ago
0
Bugfix/chirp sampling ISSUE 546

#551 MatthewAitken closed 1 year ago
1
Can't pip install (dependency conflicts with AllenSDK?)

#550 tmchartrand opened 1 year ago
2
Reconfigure spike time processing module creation to match NWB best practice

#549 tmchartrand opened 1 year ago
0
Update asset metadata for older exported NWBs at DANDI

#548 tmchartrand opened 1 year ago
0
Update metadata embedding code for cell IDs etc

#547 tmchartrand opened 1 year ago
0
Bypass bessel filter for Chirp sweeps sampled at 12.5K

#546 ru57y34nn opened 2 years ago
5
remove pandas dependency freeze

#545 tmchartrand opened 2 years ago
0
script_utils.filter_results should not return None

#544 gouwens opened 2 years ago
0
Discussion related to #542

#543 t-b opened 2 years ago
4
Stop IPFX from caching its NWB Schemas when writing/modifying NWB files

#542 njmei closed 2 years ago
0
Cell attached spontaneous firing feature extraction

#541 ru57y34nn opened 2 years ago
6
Merging master back into dev after release 1.0.5

#540 MatthewAitken closed 2 years ago
0
Release 1.0.5

#539 MatthewAitken closed 2 years ago
0
GH #537 - Decode nwb_version if byte object

#538 ru57y34nn closed 2 years ago
1
IVSCC pipeline sweep extraction crashing with TypeError at get_nwb_version()

#537 ru57y34nn closed 1 year ago
2
Feature extraction code for analysis in Gouwens, Sorensen, et al. - Cell, 2020

#536 gonzalobenegas closed 2 years ago
3
Adapt pipeline processing for cells with multiple autobias target voltages

#535 ru57y34nn opened 2 years ago
0
Gh 533/bugfix/pre and post stimulus target voltage

#534 ru57y34nn opened 2 years ago
1
Pre- and Post-stimulus baselines should be compared to target voltage

#533 ru57y34nn opened 3 years ago
3
Merge master into dev

#532 MatthewAitken closed 3 years ago
0
testing git-lfs

#531 MatthewAitken closed 3 years ago
0
Bugfix/525 null duration

#530 MatthewAitken closed 3 years ago
0
require stim offset to define epoch

#529 MatthewAitken closed 3 years ago
0
Release 1.0.4 (#523)

#528 MatthewAitken closed 3 years ago
0
fixes stimulus epoch check

#527 MatthewAitken closed 3 years ago
0
require stim offset to define epoch

#526 tmchartrand closed 3 years ago
0
null stimulus duration in QC passed sweeps

#525 tmchartrand closed 2 years ago
7
Release 1.0.4 (#523)

#524 MatthewAitken closed 3 years ago
0
Release 1.0.4

#523 MatthewAitken closed 3 years ago
0
Fix duration rounding to address #521

#522 gouwens closed 3 years ago
2
issue with run_feature_vector_extraction

#521 hongruhu closed 3 years ago
13
Address nan issue by selecting recording epoch as default

#520 tmchartrand closed 3 years ago
1
Address nan issue by trimming sweeps

#519 tmchartrand closed 3 years ago
1
Read epochs info from nwb2 files

#518 sgratiy opened 3 years ago
3
Triage ipfx issues

#517 wbwakeman closed 3 years ago
1
Failed and dropped sweeps are being used in Feature Extraction

#516 ru57y34nn closed 1 year ago
9
IndexError: Cannot find ('EXTPCllATT',)

#515 sgratiy closed 3 years ago
1
Gh-513/check in-bath electrode resistance before extracting baseline electrode current

#514 ru57y34nn closed 3 years ago
1
extract_electrde_0 should check pipette resistance before

#513 ru57y34nn closed 3 years ago
2
nwb_to_pdf fails with MIES-generated NWB2 files

#512 tmchartrand opened 3 years ago
0
GH #508 - Remove np.nan values from np.diff array

#511 ru57y34nn closed 1 year ago
3