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AllenInstitute / neuron_morphology

Tools for working with single-neuron morphological reconstructions
https://neuron-morphology.readthedocs.io/en/latest/
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Allow axon to branch from apical_dendrite #104

Open wbwakeman opened 4 years ago

wbwakeman commented 4 years ago

In neuron_morphology.validation.type_validation, add "apical dendrite" as one of the options for valid_axon_parents. This should be a "warning" but not an error.

This is from expert knowledge in the morphology group. Contact = Rachel D.

valid_axon_parents = {SOMA, AXON, BASAL_DENDRITE, None}
becomes:
valid_axon_parents = {SOMA, AXON, BASAL_DENDRITE, APICAL_DENDRITE, None}
wbwakeman commented 3 years ago

/shared/bioapps/infoapps/lims2_modules/lib/neuron_morphology/neuron_morphology/validation/type_validation.py