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AllenInstitute / neuron_morphology

Tools for working with single-neuron morphological reconstructions
https://neuron-morphology.readthedocs.io/en/latest/
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Adding statistical feature to capture "mean and stdev of bifurcation distances" #185

Closed MatthewMallory closed 1 year ago

MatthewMallory commented 3 years ago

Created script to calculate the IVSCC feature "mean and stdev bifurcation distance" . This is the mean and standard deviation of relative positions projected to a line connecting the soma to the furthest node (from the soma) of selected compartment.

Added flexibility to calculate same metric for other coordinate and compartment types.

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MatthewMallory commented 2 years ago

Let me know if we can get this PR merged, or what steps need to be done. These morphological features are used in various projects that have manuscripts in preparation. We are hoping to reference this package, so will need these features supported.