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AllenInstitute / neuron_morphology

Tools for working with single-neuron morphological reconstructions
https://neuron-morphology.readthedocs.io/en/latest/
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Science staging #208

Closed fcollman closed 1 year ago

fcollman commented 1 year ago

integrating changes to make codebase installable and up to date with most recent science publications

codecov[bot] commented 1 year ago

Codecov Report

Merging #208 (1381d0d) into dev (081cfff) will increase coverage by 0.34%. The diff coverage is 85.40%.

@@            Coverage Diff             @@
##              dev     #208      +/-   ##
==========================================
+ Coverage   77.02%   77.36%   +0.34%     
==========================================
  Files          69       70       +1     
  Lines        3734     3817      +83     
  Branches      581      590       +9     
==========================================
+ Hits         2876     2953      +77     
- Misses        714      718       +4     
- Partials      144      146       +2
Impacted Files Coverage Δ
..._morphology/feature_extractor/feature_extractor.py 93.10% <ø> (ø)
neuron_morphology/features/intrinsic.py 96.96% <ø> (ø)
neuron_morphology/features/path.py 86.11% <ø> (ø)
neuron_morphology/snap_polygons/types.py 80.00% <0.00%> (ø)
neuron_morphology/snap_polygons/geometries.py 76.52% <36.84%> (-2.91%) :arrow_down:
neuron_morphology/morphology.py 68.46% <57.14%> (ø)
..._morphology/transforms/tilt_correction/_schemas.py 78.57% <75.00%> (ø)
...rphology/transforms/affine_transformer/_schemas.py 83.78% <80.00%> (ø)
neuron_morphology/swc_io.py 86.27% <82.35%> (-10.50%) :arrow_down:
...ron_morphology/feature_extractor/feature_writer.py 86.81% <100.00%> (ø)
... and 7 more

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