make opto-tagging notebook show clearly all laser protocols and show clearly positive and negative types.

AllenInstitute / openscope_databook

OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈

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make opto-tagging notebook show clearly all laser protocols and show clearly positive and negative types. #291

Closed rcpeene closed 1 year ago

jeromelecoq commented 1 year ago

@rcpeene to add plots and code here for 3 conditions. We currently do not see consistent cells picked across all laser protocols. We want to rule out chance occurrence.

rcpeene commented 1 year ago

three sorted plots for visual coding sub-730760263/sub-730760263_ses-755434585.nwb Vip-IRES-Cre

rcpeene commented 1 year ago

Plots for a pvalb mouse sub-730760263/sub-730760263_ses-755434585.nwb

rcpeene commented 1 year ago

SST mouse sub-735109599/sub-735109599_ses-758798717.nwb

rcpeene commented 1 year ago

wildtype mouse

jeromelecoq commented 1 year ago

https://github.com/AllenInstitute/optotagging/blob/main/optotagging_results.py Jerome to try this code a little more

jeromelecoq commented 1 year ago

There were issues with cells that show as not opto-tagged throughout many experiment causing us to be confused with responses. We confirmed that an LED was used for most of this dandiset with no direct response in cells. In later session, a laser was used with stronger impact.

We agreed to move to dandiset 22 to fix this issue

jeromelecoq commented 1 year ago

Merged