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AllenInstitute / ophys_etl_pipelines

Pipelines and modules for processing optical physiology data
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Ticket/PSB-119: Add event detection to workflow. #588

Closed morriscb closed 1 year ago

morriscb commented 1 year ago

Add event detection pipeline step and (hopefully) all required code surrounding. Add dff well known file that was previously missed. Add full_genotype to ophys_experiment query. Add is_valid to ROI property.

morriscb commented 1 year ago

Don't have a successful launch of the dag yet. Not sure what's going on as airflow, when launched, contains no dags despite me confirming the environment variable is there. @aamster would you mind checking if dff and event_detection are setup correctly? I'm not sure if something changed based on the previous commits that would invalidate the current readme we have.

aamster commented 1 year ago

@morriscb are there any errors? If not maybe the environment variable is wrong

morriscb commented 1 year ago

There were no errors as I would expect them. There were just no dags loaded.