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AllenInstitute / ophys_nway_matching

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KeyError with quick start usage #72

Open rcpeene opened 1 year ago

rcpeene commented 1 year ago

Running the quick start usage from the command line yields an error. Here is the error traceback. I can't seem to find where args["output_directory"] ought to be assigned to fix it.

PS C:\Users\carter.peene\Desktop\Projects\cell_matching> python ophys_nway_matching/src/nway/nway_matching.py --input_json save_json_containers2/input_0.json --output_json ./carter_output.json
WARNING:root:many=True not supported from argparse
INFO:NwayMatching:NWAY_COMMIT_SHA None
INFO:NwayMatching:Nway matching version 0.6.0
Traceback (most recent call last):
  File "C:\Users\carter.peene\Desktop\Projects\cell_matching\ophys_nway_matching\src\nway\nway_matching.py", line 502, in <module>
    nmod.run()
  File "C:\Users\carter.peene\Desktop\Projects\cell_matching\ophys_nway_matching\src\nway\nway_matching.py", line 435, in run
    self.make_masks_from_dicts()
  File "C:\Users\carter.peene\Desktop\Projects\cell_matching\ophys_nway_matching\src\nway\nway_matching.py", line 183, in make_masks_from_dicts
    self.args['output_directory']))
KeyError: 'output_directory'
PS C:\Users\carter.peene\Desktop\Projects\cell_matching>
rcpeene commented 1 year ago

Seems like the quick start usage might need to include the specification of the --output_directory argument.