AllenInstitute / scrattch.mapping

Genearlized mapping scripts for RNA-seq and Patch-seq data
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Major update for patch-seq taxonomies #26

Closed jeremymiller closed 1 year ago

jeremymiller commented 1 year ago

Updates: 1) Allow for precalculated dendrogram in the taxonomy 2) Move patchseqQC variables from file to Anndata object 3) Create a new example for generating and mapping patch-seq to Hodge et al MTG taxonomy 4) Allow taxonomyDir input to be anndata file directly 5) Error correction in addDendrogramMarkers (and other functions) 6) Auto-correct '\' --> '/' for different platforms in file paths to allow compatibility with windows and unix

jeremymiller commented 1 year ago

For some reason I can't merge this directly. @UCDNJJ , can you please review and merge?

jeremymiller commented 1 year ago

Updates:

  1. Allow for precalculated dendrogram in the taxonomy
  2. Move patchseqQC variables from file to Anndata object
  3. Create a new example for generating and mapping patch-seq to Hodge et al MTG taxonomy
  4. Allow taxonomyDir input to be anndata file directly
  5. Error correction in addDendrogramMarkers (and other functions)
  6. Auto-correct '' --> '/' for different platforms in file paths to allow compatibility with windows and unix