Open UCDNJJ opened 1 year ago
@MatthewAitken I'm having trouble passing a test in the test_merging.py
due to issues with reading tasic_normed_select.h5ad
. Is it possible this file is corrupted on the main branch?
@MatthewAitken I'm having trouble passing a test in the
test_merging.py
due to issues with readingtasic_normed_select.h5ad
. Is it possible this file is corrupted on the main branch?
The large test files are stored as git lfs objects, do you have git lfs installed? Check the file itself - if it's just a string of characters, it needs to be pulled from git lfs. See here for installation and usage instructions https://git-lfs.com/
Ah, I haven't used git-lfs before. Just installed git-lfs and re-cloned this repo. Working as expected now, thanks!
Enable the user to provide a latent representation within anndata.obsm for clustering. If latent rep. is provided also ignore PCA computation steps in
onestep_clust
.Code updates can be found at: https://github.com/UCDNJJ/tc_latent.
TODO:
onestep_clust
to handle new user input specifying latent space (projection) and extracting from anndata obsm.Validation: