Closed MatthewAitken closed 3 years ago
see http://confluence.corp.alleninstitute.org/display/IT/Limma+DE for references
as of commit 4153cd8, the code is correct up to and including p_val calculation. The p_adj doesn't match R, and I believe something is funky with the de_param filtering in the R test script.
R test script: https://gist.github.com/MatthewAitken/5feb6c1caca5d71ae71dd043c8518de6
see http://confluence.corp.alleninstitute.org/display/IT/Limma+DE for references
as of commit 4153cd8, the code is correct up to and including p_val calculation. The p_adj doesn't match R, and I believe something is funky with the de_param filtering in the R test script.
R test script: https://gist.github.com/MatthewAitken/5feb6c1caca5d71ae71dd043c8518de6