Closed dougollerenshaw closed 3 years ago
This:
from visual_behavior.data_access import loading experiments_table = loading.get_filtered_ophys_experiment_table(release_data_only=True)
Leads to:
--------------------------------------------------------------------------- KeyError Traceback (most recent call last) <ipython-input-10-395a8d22ad92> in <module> ----> 1 experiments_table = loading.get_filtered_ophys_experiment_table(release_data_only=True, exclude_ai94=True) /allen/programs/braintv/workgroups/nc-ophys/Doug/code/visual_behavior_analysis/visual_behavior/data_access/loading.py in get_filtered_ophys_experiment_table(include_failed_data, release_data_only, exclude_ai94) 201 experiments.session_type.values] 202 experiments['cre_line'] = [full_genotype.split('/')[0] for full_genotype in experiments.full_genotype.values] --> 203 experiments = experiments.drop_duplicates(subset='ophys_experiment_id') 204 experiments = experiments.set_index('ophys_experiment_id') 205 # filter one more time on load to restrict to data release experiments ### ~/anaconda3/envs/vba/lib/python3.8/site-packages/pandas/core/frame.py in drop_duplicates(self, subset, keep, inplace) 4907 4908 inplace = validate_bool_kwarg(inplace, "inplace") -> 4909 duplicated = self.duplicated(subset, keep=keep) 4910 4911 if inplace: ~/anaconda3/envs/vba/lib/python3.8/site-packages/pandas/core/frame.py in duplicated(self, subset, keep) 4964 diff = Index(subset).difference(self.columns) 4965 if not diff.empty: -> 4966 raise KeyError(diff) 4967 4968 vals = (col.values for name, col in self.items() if name in subset) KeyError: Index(['ophys_experiment_id'], dtype='object')
I believe this is related to an issue that I introduced with PR #756.
A PR with a fix is coming.
Solved in issue #758. Closing.
This:
Leads to:
I believe this is related to an issue that I introduced with PR #756.
A PR with a fix is coming.