Adds functions to get dff traces for a given cell_roi_id without having to open the OphysExperimentObject
Goes directly to LIMS to get well_known_files, then opens the OphysDffTraceFile for the associated experiment
Example use:
from visual_behavior.data_access import loading
cell_roi_id = 1080867088
dff = loading.get_dff_traces_for_roi(cell_roi_id)
I also had some problems with old tests that were using the scipy medfilt function. It seems that newer versions of scipy use median_filter instead, and the syntax has changed. Updating syntax broke a couple of tests on the old-format foraging files, but since these are no longer relevant, I simply removed the tests.
Adds functions to get dff traces for a given cell_roi_id without having to open the OphysExperimentObject
Goes directly to LIMS to get well_known_files, then opens the
OphysDffTraceFilefor the associated experimentExample use:
I also had some problems with old tests that were using the scipy
medfiltfunction. It seems that newer versions of scipy usemedian_filterinstead, and the syntax has changed. Updating syntax broke a couple of tests on the old-format foraging files, but since these are no longer relevant, I simply removed the tests.