search

AllenNeuralDynamics / NWB_Packaging_Subject_Capsule

MIT License
0 stars 0 forks source link

Try Zarr output for NWB capsule #2

Closed jeromelecoq closed 9 months ago

jeromelecoq commented 9 months ago

I modified the subject capsule to generate a Zarr output nwb. The change is merely changing the import for which io to use for reading/writing the nwb file to the zarrnwbio. We will need to look into how to explore the data in the file and validate it. Also, it may not be supported for embargoed data yet.

jeromelecoq commented 9 months ago

This works but we need tools to check. Ahad to check different options to visualize.

jeromelecoq commented 9 months ago

Zarr output worked out of the box with Base capsule.

Alessio commented on making sure this is supported eventually for use with Dandi. Ahad commented that Dandi already support NWB-Zarr but not for embargoed data.

We need to check with Matlab what is their plan for Zarr support.

Alessio suggested we make a flag to trigger Zarr or standard NWB output on our capsules.