Revisit injection material fields now that TARS is integrated

[saskiad]

Eg. the three name fields are a lot. We want the virus prep alias, the plasmid alias, and when possible, the Addgene RRID... might want to refer to them as TARS ID rather than name/alias?

Here's a current example:

{
                    "name": "AAV-PHP-eB_7x-TRE-tDTomato",
                    "material_id": "AiV300007",
                    "full_genome_name": "AAV-PHP-eB_7x-TRE-tDTomato",
                    "plasmid_name": "AiP300001",
                    "genome_copy": 180000000000,
                    "titer": 15000000000000,
                    "titer_unit": "gc/mL",
                    "concentration": null,
                    "concentration_unit": null,
                    "prep_lot_number": "VT3216g",
                    "prep_date": "2022-02-03",
                    "prep_type": "Purified",
                    "prep_protocol": "SOP#VC003"
}

"material_id" is the viral prep lot alias. Let's call this virus_TARS_id "plasmid_name" is the plasmid alias. Let's call this plasmid_TARS_id and there's no place for an external facing RRID (Addgene ID) which we'd ideally have in here. Let's add rrid as a PIDName, Technically, the Addgene ID is a RRID (eg. "RRID:Addgene_198508") ... I feel like we need to go through our TARS entries and add rrid alongside the addgene ids. It's an existing field, just isn't populated.

[saskiad]

@mekhlakapoor I'm generating metadata for the exaspim data for the workshop coming up and in ingesting some virus constructs wrestling with the class a little bit. I'd like to update our injection materials class based on this, so I want to give you visibility as you are starting to pull things from TARS. I can do this asap after the v2 update, but want you to know. I think you'll have plenty to chew on reading things from TARS already, so this will mostly just be renaming things and maybe adding one field.

[saskiad]

There's a different issue to fix, which is that not all injection materials are viruses. This is why we have concentration in addition to titer. But I'm thinking of making injection_materials a list of a Union of Virus Prep and ... other materials. I can almost use Reagent for the other material, but we want a concentration, so it will need it's own class.