Use local containers - Githubissues

AllenNeuralDynamics / aind-ephys-pipeline

Code Ocean pipeline for ephys processing with Kilosort2.5

MIT License

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Use local containers #16

Closed mbsabath closed 2 months ago

mbsabath commented 2 months ago

Changes:

Create list of docker containers to pull
Add script pulling containers to local cache directory
Rough update of Readme on how to pull containers
Add container + version variables to slurm script
Update main_slurm.nf to use local singularity files