AllenNeuralDynamics / aind-ephys-pipeline

Code Ocean pipeline for ephys processing with Kilosort2.5
MIT License
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AIND input format for data ingestion #24

Open magland opened 3 days ago

magland commented 3 days ago

I'm looking into the AIND format option for inputting data into the pipeline. The readme states

aind: data ingestion used at AIND. The input folder must contain an ecephys subfolder which in turn includes an ecephys_clipped (clipped Open Ephys folder) and an ecephys_compressed (compressed traces with Zarr). In addition, JSON file following the aind-data-schema are parsed to create processing and NWB metadata.

Is there a way to get more details on that? What should be in the ecephys/ecephys_clipped and ecephys/ecephys_compressed folders? And why are they both needed? Isn't this a lot of duplicated data?