Update AIND batch preprocessing function

AllenNeuralDynamics / aind-fip-dff

This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

MIT License

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Update AIND batch preprocessing function #1

Closed rachelstephlee closed 3 months ago

rachelstephlee commented 5 months ago

There are two identical functions batch_processing_new and batch_processing

This should be consolidated. Per @BrianNGitahi , they are waiting if Johannes will add to the batch_processing function, hence they created two versions.

jeromelecoq commented 4 months ago

Johannes will start adding his method: Double exponential.

alexpiet commented 4 months ago

Motion correction also needs to be implemented

jeromelecoq commented 3 months ago

@j-friedrich working on this.

jeromelecoq commented 3 months ago

Maybe consider adding a description of the Algo as a markdown file in the fiber document here : https://github.com/AllenNeuralDynamics/aind-physio-arch/tree/main/doc/teams/fiber

j-friedrich commented 3 months ago

Added markdown file to https://github.com/AllenNeuralDynamics/aind-physio-arch/tree/main/doc/teams/fiber
Opened (PR)[https://github.com/AllenNeuralDynamics/aind-fip-dff/pull/7]

jeromelecoq commented 3 months ago

Moving to testing, separate ticket.