nwb processing error after update

[hanhou]

nwb files failure after recent GUI update

2023-11-14 02:45:42 INFO [process_nwbs.py:<module>]: nwb files to process: ['/tmp/nxf.sqr0W0fYPK/capsule/code/../data/foraging_nwb_bonsai/batch_5/684041_2023-11-13_13-42-31.nwb']
2023-11-14 02:45:42 INFO [process_nwbs.py:process_one_nwb]: /tmp/nxf.sqr0W0fYPK/capsule/code/../data/foraging_nwb_bonsai/batch_5/684041_2023-11-13_13-42-31.nwb processing...
2023-11-14 02:45:42 ERROR [process_nwbs.py:process_one_nwb]: /tmp/nxf.sqr0W0fYPK/capsule/code/../data/foraging_nwb_bonsai/batch_5/684041_2023-11-13_13-42-31.nwb failed!!

2023-11-14 02:45:41 INFO [process_nwbs.py:<module>]: nwb files to process: ['/tmp/nxf.CmfYR1gSCY/capsule/code/../data/foraging_nwb_bonsai/batch_12/687582_2023-11-13_13-59-50.nwb']
2023-11-14 02:45:41 INFO [process_nwbs.py:process_one_nwb]: /tmp/nxf.CmfYR1gSCY/capsule/code/../data/foraging_nwb_bonsai/batch_12/687582_2023-11-13_13-59-50.nwb processing...
2023-11-14 02:45:42 ERROR [process_nwbs.py:process_one_nwb]: /tmp/nxf.CmfYR1gSCY/capsule/code/../data/foraging_nwb_bonsai/batch_12/687582_2023-11-13_13-59-50.nwb failed!!

2023-11-14 02:46:17 INFO [process_nwbs.py:<module>]: nwb files to process: ['/tmp/nxf.Gu1LR8W8l1/capsule/code/../data/foraging_nwb_bonsai/batch_10/687553_2023-11-13_11-09-55.nwb']
2023-11-14 02:46:17 INFO [process_nwbs.py:process_one_nwb]: /tmp/nxf.Gu1LR8W8l1/capsule/code/../data/foraging_nwb_bonsai/batch_10/687553_2023-11-13_11-09-55.nwb processing...
2023-11-14 02:46:17 ERROR [process_nwbs.py:process_one_nwb]: /tmp/nxf.Gu1LR8W8l1/capsule/code/../data/foraging_nwb_bonsai/batch_10/687553_2023-11-13_11-09-55.nwb failed!!

2023-11-14 02:46:43 INFO [process_nwbs.py:<module>]: nwb files to process: ['/tmp/nxf.QZpz9xRXio/capsule/code/../data/foraging_nwb_bonsai/batch_8/694688_2023-11-13_11-38-32.nwb']
2023-11-14 02:46:43 INFO [process_nwbs.py:process_one_nwb]: /tmp/nxf.QZpz9xRXio/capsule/code/../data/foraging_nwb_bonsai/batch_8/694688_2023-11-13_11-38-32.nwb processing...
2023-11-14 02:46:43 ERROR [process_nwbs.py:process_one_nwb]: /tmp/nxf.QZpz9xRXio/capsule/code/../data/foraging_nwb_bonsai/batch_8/694688_2023-11-13_11-38-32.nwb failed!!

2023-11-14 02:45:12 INFO [process_nwbs.py:<module>]: nwb files to process: ['/tmp/nxf.Lw1w3Wc6Db/capsule/code/../data/foraging_nwb_bonsai/batch_3/694874_2023-11-13_13-11-55.nwb']
2023-11-14 02:45:12 INFO [process_nwbs.py:process_one_nwb]: /tmp/nxf.Lw1w3Wc6Db/capsule/code/../data/foraging_nwb_bonsai/batch_3/694874_2023-11-13_13-11-55.nwb processing...
2023-11-14 02:45:12 ERROR [process_nwbs.py:process_one_nwb]: /tmp/nxf.Lw1w3Wc6Db/capsule/code/../data/foraging_nwb_bonsai/batch_3/694874_2023-11-13_13-11-55.nwb failed!!

2023-11-14 02:45:13 INFO [process_nwbs.py:<module>]: nwb files to process: ['/tmp/nxf.kqWoq1NsYy/capsule/code/../data/foraging_nwb_bonsai/batch_1/699982_2023-11-13_13-15-18.nwb']
2023-11-14 02:45:13 INFO [process_nwbs.py:process_one_nwb]: /tmp/nxf.kqWoq1NsYy/capsule/code/../data/foraging_nwb_bonsai/batch_1/699982_2023-11-13_13-15-18.nwb processing...
2023-11-14 02:45:13 ERROR [process_nwbs.py:process_one_nwb]: /tmp/nxf.kqWoq1NsYy/capsule/code/../data/foraging_nwb_bonsai/batch_1/699982_2023-11-13_13-15-18.nwb failed!!

2023-11-14 02:46:42 INFO [process_nwbs.py:<module>]: nwb files to process: ['/tmp/nxf.tHJWx2qF0v/capsule/code/../data/foraging_nwb_bonsai/batch_7/687553_2023-11-13_11-33-55.nwb']
2023-11-14 02:46:42 INFO [process_nwbs.py:process_one_nwb]: /tmp/nxf.tHJWx2qF0v/capsule/code/../data/foraging_nwb_bonsai/batch_7/687553_2023-11-13_11-33-55.nwb processing...
2023-11-14 02:46:42 ERROR [process_nwbs.py:process_one_nwb]: /tmp/nxf.tHJWx2qF0v/capsule/code/../data/foraging_nwb_bonsai/batch_7/687553_2023-11-13_11-33-55.nwb failed!!

2023-11-14 02:46:17 INFO [process_nwbs.py:<module>]: nwb files to process: ['/tmp/nxf.stxHA2dadZ/capsule/code/../data/foraging_nwb_bonsai/batch_6/689515_2023-11-13_13-09-40.nwb']
2023-11-14 02:46:17 INFO [process_nwbs.py:process_one_nwb]: /tmp/nxf.stxHA2dadZ/capsule/code/../data/foraging_nwb_bonsai/batch_6/689515_2023-11-13_13-09-40.nwb processing...
2023-11-14 02:46:17 ERROR [process_nwbs.py:process_one_nwb]: /tmp/nxf.stxHA2dadZ/capsule/code/../data/foraging_nwb_bonsai/batch_6/689515_2023-11-13_13-09-40.nwb failed!!

2023-11-14 02:45:41 INFO [process_nwbs.py:<module>]: nwb files to process: ['/tmp/nxf.hxZSigDIXw/capsule/code/../data/foraging_nwb_bonsai/batch_2/689799_2023-11-13_13-36-53.nwb']
2023-11-14 02:45:41 INFO [process_nwbs.py:process_one_nwb]: /tmp/nxf.hxZSigDIXw/capsule/code/../data/foraging_nwb_bonsai/batch_2/689799_2023-11-13_13-36-53.nwb processing...
2023-11-14 02:45:41 ERROR [process_nwbs.py:process_one_nwb]: /tmp/nxf.hxZSigDIXw/capsule/code/../data/foraging_nwb_bonsai/batch_2/689799_2023-11-13_13-36-53.nwb failed!!

...

[hanhou]

Another bug: Typical situation for multiple bonsai sessions per day is that the RAs pressed more than once "Save" button but only started the session once. Therefore, I should generate nwb_suffix from the bonsai file name instead of session_start_time. Otherwise the processed nwb files may have the same name, like shown in this error

[hanhou]

Should ask Xinxin about the name convention. Looks like sometimes the json file name was from session_start_time whereas sometimes it's session_save_time.

[hanhou]

Finally fixed this bug #4 and #5

[hanhou]

One more bug in the triggering capsule. See this commit