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AllenNeuralDynamics / aind-ophys-extraction-suite2p

Combines cellpose and suite2p to extract sources, i.e. ROIs and their traces.
MIT License
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control which images are used for cellpose #6

Open dyf opened 3 days ago

dyf commented 3 days ago

expose a command line arg (and app panel param) that lets users choose which images are used for cellpose anatomical mode.

existing anatomical_only arg does this, so all we need to do is add correlation as an option, and add an app panel to our production capsule(s).

j-friedrich commented 3 days ago

Currently the command line arg --anatomical_only supports mean and max, but neither correlation nor multi-select

dyf commented 3 days ago

great, updated the issue