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AllenNeuralDynamics
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aind-ophys-motion-correction
MIT License
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Create motion correction qc.json
#40
seanmcculloch
closed
3 weeks ago
1
Convert debug movie to vds
#39
arielleleon
opened
1 month ago
0
37 update capsules to aind data schema 11
#38
arielleleon
opened
1 month ago
1
Update capsules to aind-data-schema 1.1
#37
arielleleon
closed
1 month ago
1
Integrate metrics into aind-motion-correction capsule
#36
arielleleon
opened
1 month ago
5
Add generic h5 and TIFF input to motion correction repository
#35
arielleleon
opened
1 month ago
3
fix and test motion correction for bergamo and singleplane
#34
arielleleon
closed
1 month ago
0
expose patch size parameter
#33
arielleleon
opened
1 month ago
0
Allow multiple input formats
#32
arielleleon
opened
1 month ago
0
use compression out output registered h5
#31
dyf
opened
1 month ago
0
support a directory of tiffs
#30
dyf
opened
1 month ago
0
motion correction - Singleplane and multiplane compatibility
#29
arielleleon
closed
3 weeks ago
1
Dynamically update pipeline and code version in processing.json
#28
arielleleon
opened
2 months ago
0
Feat single plane
#27
arielleleon
closed
1 month ago
0
Expose aind-ophys-motion-correction parameters to flexibly motion correct data
#25
arielleleon
closed
1 month ago
2
Single plane pipeline aware of which epochs to use for processing
#24
arielleleon
closed
3 months ago
1
Feat bergamo processing
#23
arielleleon
closed
6 months ago
0
Feat bergamo processing
#22
arielleleon
closed
6 months ago
0
pinning version and saving metadata with new name
#21
arielleleon
closed
11 months ago
0
Feature pipeline edits
#20
arielleleon
closed
11 months ago
1
Add platform json to procedures.json
#19
arielleleon
closed
1 year ago
2
add short .mp4 movie of registered data for QC purposes
#18
arielleleon
closed
3 months ago
2
Remove copy of platform json
#17
arielleleon
closed
3 months ago
2
Remove double try/except
#16
jeromelecoq
opened
1 year ago
3
Review refactor
#15
j-friedrich
closed
1 year ago
2
Look into non-rigid motion implementation
#14
arielleleon
closed
3 months ago
1
frame rate of ophys movie set not reported in all platform json files
#13
arielleleon
closed
1 year ago
1
Capsule needs a directory only to find raw movie and relevant files
#12
arielleleon
closed
1 year ago
1
Fix inputs to reflect latest file structure
#11
arielleleon
closed
1 year ago
1
Feature refactor
#10
jeromelecoq
closed
1 year ago
1
Bug absolute path
#9
arielleleon
closed
11 months ago
0
Safe guard against different file types
#8
arielleleon
closed
3 months ago
1
Feat pipeline build
#7
arielleleon
closed
1 year ago
2
Feature remove pipeline utils
#6
arielleleon
closed
1 year ago
7
updated registration_utils.py
#5
arielleleon
closed
1 year ago
0
Feat add data process json
#4
arielleleon
closed
1 year ago
0
migrate updated motion correction capsule to github
#2
arielleleon
closed
1 year ago
0
add suite2p motion correction parameters to output processing json
#3
arielleleon
closed
1 year ago
3
Clean up motion correction capsule repository
#1
dyf
closed
3 months ago
14